https://github.com/bioconductor/orchestratingsinglecellanalysis
Content for the OSCA Book.
https://github.com/bioconductor/orchestratingsinglecellanalysis
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 17 committers (17.6%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.2%) to scientific vocabulary
Keywords
book
book-base
rna-seq
single-cell
single-cell-rna-seq
Keywords from Contributors
bioconductor
bioconductor-package
bioinformatics
human-cell-atlas
core-package
transcriptomics
u24ca289073
stickers
dimension-reduction
feature-extraction
Last synced: 5 months ago
·
JSON representation
Repository
Content for the OSCA Book.
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: Dockerfile
- Default Branch: devel
- Homepage: http://bioconductor.org/books/devel/OSCA/
- Size: 3.07 MB
Statistics
- Stars: 66
- Watchers: 7
- Forks: 35
- Open Issues: 4
- Releases: 0
Topics
book
book-base
rna-seq
single-cell
single-cell-rna-seq
Created over 6 years ago
· Last pushed almost 3 years ago
Metadata Files
Readme
README.md
Orchestrating Single Cell Analysis
All book-related source code has been moved to the OSCA-source organization. This repository is retained only as a signpost... and also to provide a Docker image.
The Docker image itself contains all of the packages required to create the full set of OSCA books.
The latest sources of the books themselves are stored in /home/book/.
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Watch event: 1
Last Year
- Watch event: 1
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| LTLA | i****s@g****m | 649 |
| Robert A. Amezquita | 2****a | 112 |
| GitHub Action | a****n@g****m | 67 |
| Robert A. Amezquita | r****a@f****g | 33 |
| Kevin Rue-Albrecht | k****7@g****m | 16 |
| Stuart Lee | l****s@w****u | 10 |
| Stephanie Hicks | s****s@g****m | 10 |
| Peter Hickey | p****y@g****m | 4 |
| Charlotte Soneson | c****n@g****m | 2 |
| Federico Marini | m****f@u****e | 1 |
| Martin Morgan | m****n@r****g | 1 |
| Mike Smith | g****h@g****m | 1 |
| Nitesh Turaga | n****a@g****m | 1 |
| Pierre-Luc | p****n@g****m | 1 |
| Stephanie Hicks | s****1@c****r | 1 |
| Sebastian Jaenicke | s****k@C****E | 1 |
| AlexNghiem | a****m@g****m | 1 |
Committer Domains (Top 20 + Academic)
cebitec.uni-bielefeld.de: 1
compute-090.cm.cluster: 1
roswellpark.org: 1
uni-mainz.de: 1
wehi.edu.au: 1
fredhutch.org: 1
github.com: 1
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 33
- Total pull requests: 31
- Average time to close issues: 22 days
- Average time to close pull requests: 16 days
- Total issue authors: 19
- Total pull request authors: 11
- Average comments per issue: 2.7
- Average comments per pull request: 0.97
- Merged pull requests: 29
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- LTLA (15)
- johnomics (1)
- kevinrue (1)
- pchome61801 (1)
- MAmin99m (1)
- yeroslaviz (1)
- 814471489 (1)
- nturaga (1)
- parsboy66 (1)
- yjm1992312 (1)
- tmms1 (1)
- matthewcarlucci (1)
- tiagochst (1)
- StevenVanLaere (1)
- YinCY123 (1)
Pull Request Authors
- LTLA (12)
- PeteHaitch (4)
- kevinrue (4)
- csoneson (3)
- stephaniehicks (2)
- grimbough (1)
- sa-lee (1)
- federicomarini (1)
- sjaenick (1)
- plger (1)
- nturaga (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
.github/workflows/rebuild.yaml
actions
- actions/checkout v2 composite
Dockerfile
docker
- bioconductor/bioconductor_docker devel build