Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bioconductor/biocio

Standard input / output framework for use by Bioconductor packages

https://github.com/bioconductor/biocio

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 8 committers (12.5%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.4%) to scientific vocabulary

Keywords

bioconductor-package core-package

Keywords from Contributors

bioconductor u24ca289073 transcriptomics rna-seq immune-repertoire grna-sequence genomics gene single-cell bioinformatics
Last synced: 6 months ago · JSON representation

Repository

Standard input / output framework for use by Bioconductor packages

Basic Info
  • Host: GitHub
  • Owner: Bioconductor
  • Language: R
  • Default Branch: devel
  • Homepage:
  • Size: 70.3 KB
Statistics
  • Stars: 1
  • Watchers: 13
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Topics
bioconductor-package core-package
Created over 5 years ago · Last pushed 10 months ago
Metadata Files
Readme Changelog

README.md

BiocIO

The BiocIO package contains high-level abstract classes and generics used by developers to build IO funcionality within the Bioconductor suite of packages.

Abstract Classes

  • BiocFile
  • CompressedFile

Generics

  • export
  • import

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Push event: 4
  • Create event: 2
Last Year
  • Push event: 4
  • Create event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 55
  • Total Committers: 8
  • Avg Commits per committer: 6.875
  • Development Distribution Score (DDS): 0.564
Past Year
  • Commits: 14
  • Committers: 3
  • Avg Commits per committer: 4.667
  • Development Distribution Score (DDS): 0.429
Top Committers
Name Email Commits
Daniel Van Twisk d****k@r****g 24
LiNk-NY m****z@r****g 9
Nitesh Turaga n****a@g****m 8
Kayla-Morrell k****l@r****g 4
J Wokaty j****y@s****u 4
Martin Morgan M****n@R****g 3
J Wokaty j****y 2
Peter Hickey p****y@g****m 1
Committer Domains (Top 20 + Academic)
roswellpark.org: 4 sph.cuny.edu: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 3
  • Total pull requests: 1
  • Average time to close issues: 2 days
  • Average time to close pull requests: about 13 hours
  • Total issue authors: 3
  • Total pull request authors: 1
  • Average comments per issue: 1.67
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • DarioS (1)
  • PeteHaitch (1)
  • hpages (1)
Pull Request Authors
  • PeteHaitch (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

DESCRIPTION cran
  • R >= 4.0 depends
  • BiocGenerics * imports
  • S4Vectors * imports
  • methods * imports
  • tools * imports
  • BiocStyle * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests