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https://github.com/bioconductor/matrixgenerics

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

https://github.com/bioconductor/matrixgenerics

Science Score: 26.0%

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Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Basic Info
Statistics
  • Stars: 12
  • Watchers: 12
  • Forks: 1
  • Open Issues: 5
  • Releases: 0
Topics
bioconductor-package core-package
Created over 8 years ago · Last pushed 10 months ago
Metadata Files
Readme

README.md

MatrixGenerics is an R/Bioconductor package that provides the S4 generics for popular row and column aggregation functions for matrices (e.g. colVars(), rowMedians()). It follows the API developed by the matrixStats package. The target audience for MatrixGenerics are R package developers that want to write code that can automatically handle different kind of matrix implementations: for example base R matrix, the S4 Matrix (including sparse representations), and DelayedMatrix objects.

A prerequisite to handle these matrix objects is that a package with the corresponding implementation is available. So far, there are six packages:

This package imports matrixStats and automatically forwards all function calls on matrix, array, or numeric objects to matrixStats. To handle other matrix-like objects, the user must manually install the package that implements row and column aggregation methods for those objects (e.g. the sparseMatrixStats, SparseArray, DelayedArray, or DelayedMatrixStats package).

See https://bioconductor.org/packages/MatrixGenerics for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 3
  • Issue comment event: 8
  • Push event: 5
  • Create event: 2
Last Year
  • Issues event: 3
  • Issue comment event: 8
  • Push event: 5
  • Create event: 2

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 24
  • Total pull requests: 15
  • Average time to close issues: 5 months
  • Average time to close pull requests: 19 days
  • Total issue authors: 9
  • Total pull request authors: 3
  • Average comments per issue: 5.83
  • Average comments per pull request: 6.6
  • Merged pull requests: 14
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: about 3 hours
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 7.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
  • const-ae (7)
  • HenrikBengtsson (5)
  • PeteHaitch (4)
  • evanbiederstedt (1)
  • rcastelo (1)
  • GabrielHoffman (1)
  • hpages (1)
  • bnprks (1)
  • yojetsharma (1)
Pull Request Authors
  • const-ae (7)
  • hpages (5)
  • PeteHaitch (2)
Top Labels
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question (3)
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Dependencies

DESCRIPTION cran
  • matrixStats >= 0.60.1 depends
  • methods * imports
  • DelayedMatrixStats * suggests
  • Matrix * suggests
  • SummarizedExperiment * suggests
  • sparseMatrixStats * suggests
  • testthat >= 2.1.0 suggests