https://github.com/bioconductor/geneplotter
Graphics related functions for Bioconductor
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.6%) to scientific vocabulary
Keywords
bioconductor-package
core-package
Last synced: 6 months ago
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JSON representation
Repository
Graphics related functions for Bioconductor
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/geneplotter
- Size: 7.32 MB
Statistics
- Stars: 3
- Watchers: 8
- Forks: 2
- Open Issues: 2
- Releases: 0
Topics
bioconductor-package
core-package
Created over 8 years ago
· Last pushed 10 months ago
Metadata Files
Readme
README
geneplotter contains plotting functions for microarrays
To Do:
o A mechanism to order the rows and columns of the microarray matrix.
order.restricted is a start. We need a mechanism for dendrograms.
Dan Carr suggested that there was a method based on Principle components.
o Links to the annotation library. Using locator(1) we should be able
to simulate interaction with the plot and look up genes at LocusLink
etc.
o Color scheme for Red-Blue is the same as Cheng's but the Red Green still
looks funny.
o Need some notion of a viewport so that we can zoom in and out. Perhaps
Paul Murrell, Ross Ihaka or Saikat DebRoy can help out in this regard.
o Lots of other visualization methods need to be implemented.
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Watch event: 1
- Push event: 2
- Create event: 2
Last Year
- Watch event: 1
- Push event: 2
- Create event: 2
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 3
- Total pull requests: 2
- Average time to close issues: 8 months
- Average time to close pull requests: 3 months
- Total issue authors: 3
- Total pull request authors: 2
- Average comments per issue: 3.0
- Average comments per pull request: 11.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- SunSummoner (1)
- LiNk-NY (1)
- vjcitn (1)
Pull Request Authors
- sopeadeniji (1)
- Rohit-Satyam (1)
Top Labels
Issue Labels
bug (1)