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Open Source Science

https://github.com/bioconductor/loomexperiment

A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/

https://github.com/bioconductor/loomexperiment

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/

Basic Info
Statistics
  • Stars: 6
  • Watchers: 9
  • Forks: 5
  • Open Issues: 2
  • Releases: 0
Created over 8 years ago · Last pushed about 1 year ago
Metadata Files
Changelog

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 1
  • Issue comment event: 1
  • Push event: 2
  • Create event: 2
Last Year
  • Issues event: 1
  • Issue comment event: 1
  • Push event: 2
  • Create event: 2

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 12
  • Total pull requests: 3
  • Average time to close issues: 23 days
  • Average time to close pull requests: 13 days
  • Total issue authors: 8
  • Total pull request authors: 2
  • Average comments per issue: 2.75
  • Average comments per pull request: 1.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • nh3 (3)
  • nsoranzo (2)
  • lazappi (2)
  • ccshao (1)
  • alexvpickering (1)
  • nilseling (1)
  • lawremi (1)
  • zh-zhang1984 (1)
  • mtmorgan (1)
Pull Request Authors
  • LiNk-NY (2)
  • nsoranzo (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

DESCRIPTION cran
  • BiocIO * depends
  • R >= 3.5.0 depends
  • S4Vectors * depends
  • SingleCellExperiment * depends
  • SummarizedExperiment * depends
  • methods * depends
  • rhdf5 * depends
  • DelayedArray * imports
  • GenomicRanges * imports
  • HDF5Array * imports
  • Matrix * imports
  • stats * imports
  • stringr * imports
  • utils * imports
  • BiocStyle * suggests
  • knitr * suggests
  • reticulate * suggests
  • rmarkdown * suggests
  • testthat * suggests