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https://github.com/bioconductor/workshopbuilder

Installing and rendering workshop vignettes from book repository GitHub issues

https://github.com/bioconductor/workshopbuilder

Science Score: 13.0%

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    Low similarity (4.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Installing and rendering workshop vignettes from book repository GitHub issues

Basic Info
  • Host: GitHub
  • Owner: Bioconductor
  • Language: R
  • Default Branch: devel
  • Homepage:
  • Size: 35.2 KB
Statistics
  • Stars: 3
  • Watchers: 9
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Archived
Created about 7 years ago · Last pushed over 3 years ago
Metadata Files
Readme

README.md

workshopbuilder

A package to install and render workshop vignettes. The workshop locations (on GitHub) are read from the main book repository's (Bioconductor/BiocWorkshops2019) issues.

Installation

r BiocManager::install("Bioconductor/workshopbuilder")

Workflow

A typical workflow would involve setting a few package options:

1) Main book repository on GitHub

r .options$set("BOOK_REPO", "Bioconductor/BiocWorkshops2019")

2) Local workshop book directory

r .options$set("LOCAL_REPO", normalizePath("~/BiocWorkshops2019"))

3) Local workshop repositories directory

r .options$set("REPOS_PATH", normalizePath("~/Bioconductor/Workshops"))

After the initial setup, building a workshop is as follows:

```r library(workshopbuilder)

workshop_meta <- installWorkshops("MultiAssayWorkshop", exclude = FALSE, ncpus = 12)

getBookRepo()

addWorkshops(workshop_meta)

rmds <- transferVignettes(workshop_meta)

addRmdFiles(rmds)

renderWorkshops(format = "all") ```

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

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  • lpantano (1)
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