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Open Source Science

https://github.com/bioconductor/annotationforge

Tools for building SQLite-based annotation data packages

https://github.com/bioconductor/annotationforge

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.5%) to scientific vocabulary

Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

Tools for building SQLite-based annotation data packages

Basic Info
Statistics
  • Stars: 5
  • Watchers: 8
  • Forks: 9
  • Open Issues: 9
  • Releases: 0
Topics
bioconductor-package core-package
Created over 8 years ago · Last pushed 10 months ago
Metadata Files
Readme Changelog

README.md

AnnotationForge is an R/Bioconductor package that provides tools for building SQLite-based annotation data packages.

See https://bioconductor.org/packages/AnnotationForge for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 3
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 4
  • Create event: 1
Last Year
  • Issues event: 3
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 4
  • Create event: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 53
  • Total pull requests: 6
  • Average time to close issues: 4 months
  • Average time to close pull requests: 4 months
  • Total issue authors: 44
  • Total pull request authors: 5
  • Average comments per issue: 3.75
  • Average comments per pull request: 5.17
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 4
  • Pull requests: 1
  • Average time to close issues: 38 minutes
  • Average time to close pull requests: N/A
  • Issue authors: 4
  • Pull request authors: 1
  • Average comments per issue: 1.25
  • Average comments per pull request: 10.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
  • lshep (3)
  • vjcitn (3)
  • npokorzynski (2)
  • janstrauss1 (2)
  • phoebee-h (2)
  • knokknok (2)
  • hexaflexa (2)
  • najibveto (2)
  • yangskyfucker (1)
  • antalk2 (1)
  • amanda-hi (1)
  • imalsoft9 (1)
  • hpages (1)
  • kmosi0 (1)
  • mbxds5 (1)
Pull Request Authors
  • grimbough (2)
  • villafup (2)
  • knokknok (1)
  • martinholub (1)
  • mcarlsn (1)
Top Labels
Issue Labels
good first issue (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • AnnotationDbi >= 1.33.14 depends
  • Biobase >= 1.17.0 depends
  • BiocGenerics >= 0.15.10 depends
  • R >= 2.7.0 depends
  • methods * depends
  • utils * depends
  • DBI * imports
  • RCurl * imports
  • RSQLite * imports
  • S4Vectors * imports
  • XML * imports
  • BiocFileCache * suggests
  • BiocManager * suggests
  • BiocStyle * suggests
  • Biostrings * suggests
  • GO.db * suggests
  • GenomeInfoDb >= 1.17.1 suggests
  • Homo.sapiens * suggests
  • affy * suggests
  • biomaRt * suggests
  • hgu95av2.db * suggests
  • httr * suggests
  • human.db0 * suggests
  • knitr * suggests
  • markdown * suggests
  • org.Hs.eg.db * suggests
inst/AnnDbPkg-templates/ARABIDOPSIS.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • org.At.tair.db >= depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/BASEPKG.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
inst/AnnDbPkg-templates/COELICOLOR.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/GO.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
inst/AnnDbPkg-templates/INPARANOID.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
inst/AnnDbPkg-templates/KEGG.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
inst/AnnDbPkg-templates/MALARIA.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/NCBICHIP.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • ORGPKGDEP * depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/NCBIORG.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • ORGPKGDEP * depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/NOSCHEMA.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/ORTHOLOGY.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/PFAM.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
inst/AnnDbPkg-templates/YEAST.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/YEASTCHIP.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • org.Sc.sgd.db >= depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/AnnDbPkg-templates/YEASTNCBI.DB/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.7.0 depends
  • methods * depends
  • DBI * suggests
  • RUnit * suggests
  • annotate * suggests
inst/ProbePkg-template/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 1.6 depends
inst/seqnames-template/DESCRIPTION cran
  • AnnotationDbi >= depends
  • R >= 2.15.0 depends
  • methods * depends
  • AnnotationDbi * imports
  • methods * imports
inst/AnnDbPkg-templates/ORGANISM.DB/DESCRIPTION cran