https://github.com/bioconductor/bioconductor_codespaces
Testing scripts for Bioconductor codespaces
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.0%) to scientific vocabulary
Repository
Testing scripts for Bioconductor codespaces
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: Shell
- Default Branch: devel
- Size: 29.3 KB
Statistics
- Stars: 0
- Watchers: 11
- Forks: 3
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Bioconductor / R Codespaces
Summary
Adapted from -- See Microsoft VS Code - under MIT License
Perform statistical computing using the R language on Linux. Includes R / Bioconductor and needed extensions.
| Metadata | Value |
|----------|-------|
| Contributors | nturaga |
| Categories | Community, Languages |
| Definition type | Dockerfile |
| Works in Codespaces | Yes |
| Container host OS support | Linux, macOS, Windows |
| Container OS | Ubuntu |
| Languages, platforms | R |
Using this definition
If this is your first time using a development container, please see getting started information on setting up Remote-Containers or creating a codespace using GitHub Codespaces.
Start VS Code and open your project folder or connect to a codespace.
Press F1 select and Add Development Container Configuration Files... command for Remote-Containers or Codespaces.
Note: If needed, you can drag-and-drop the
.devcontainerfolder from this sub-folder in a locally cloned copy of this repository into the VS Code file explorer instead of using the command.
Select this definition. You may also need to select Show All Definitions... for it to appear.
Finally, press F1 and run Remote-Containers: Reopen Folder in Container or Codespaces: Rebuild Container to start using the definition.
Testing the definition
This definition includes some test code that will help you verify it is working as expected on your system. Follow these steps:
- If this is your first time using a development container, please follow the getting started steps to set up your machine.
- Clone this repository.
- Start VS Code, press F1, and select Remote-Containers: Open Folder in Container...
- Select the
Bioconductor_Codespacesfolder. - Open the
test-project/hello_bioc.Rand press the "Run Source" icon displayed in the upper right (or Ctrl + Shift + S key) to run the code. - You should see "Hello, remote world!" in a terminal window after the program executes.
License
Licensed under the MIT License
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Watch event: 1
Last Year
- Watch event: 1
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0