https://github.com/bioconductor/biochubsingestr
Helper package for users to upload data to temporary BiocHubsIngest endpoints
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Keywords
Repository
Helper package for users to upload data to temporary BiocHubsIngest endpoints
Basic Info
Statistics
- Stars: 0
- Watchers: 7
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
BiocHubsIngestR
R package for uploading data to Bioconductor Hubs Ingest endpoints.
Description
BiocHubsIngestR provides tools for uploading data to temporary S3 endpoints created by the Bioconductor Hubs Ingest stack. It uses the paws SDK for R to handle S3 operations and provides a simple interface for authentication and file uploads.
Prerequisites
Before using this package, you must: 1. Have an S3 ingestion endpoint generated by a Bioconductor admin 2. Receive access credentials (username and password) from the admin
Installation
```r if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("Bioconductor/BiocHubsIngestR") ```
Usage
Authentication
```r
Set up credentials (provided by Bioconductor admin)
BiocHubsIngestR::auth(username = "yourusername", password = "yourpassword") ```
Uploading Data
```r
Upload a single file
BiocHubsIngestR::upload("path/to/your/file.txt")
Upload an entire directory
BiocHubsIngestR::upload("path/to/your/data/directory") ```
Important Notes
- After completing your data upload, notify the Bioconductor admin you are coordinating with
- Once you inform the admin that the upload is complete, the endpoint will be locked for processing
- No further uploads will be possible after the endpoint is locked
Support
For questions or issues: - Open an issue on the GitHub repository - Contact the Bioconductor team
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Watch event: 1
- Delete event: 1
- Push event: 9
- Pull request event: 4
- Create event: 4
Last Year
- Watch event: 1
- Delete event: 1
- Push event: 9
- Pull request event: 4
- Create event: 4
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- almahmoud (2)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- paws * imports
- knitr * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests