https://github.com/bioconductor/hcamatrixbrowser
:warning: DEPRECATED :warning: Download Matrix Data using the HCA API
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
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○.zenodo.json file
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○Scientific vocabulary similarity
Low similarity (8.2%) to scientific vocabulary
Keywords
bioconductor
human-cell-atlas
Last synced: 10 months ago
·
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Repository
:warning: DEPRECATED :warning: Download Matrix Data using the HCA API
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/HCAMatrixBrowser
- Size: 93.8 KB
Statistics
- Stars: 3
- Watchers: 10
- Forks: 0
- Open Issues: 0
- Releases: 0
Archived
Topics
bioconductor
human-cell-atlas
Created over 7 years ago
· Last pushed almost 2 years ago
Metadata Files
Readme
Changelog
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
out.width = "100%"
)
options(tibble.print_min = 5, tibble.print_max = 5)
```
# HCAMatrixBrowser 
## Overview
`HCAMatrixBrowser` gives users access to the matrix download service for
the [Human Cell Atlas](https://data.humancellatlas.org/) project.
It provides a main function for downloading data matrices from either a set
of `bundle_fqids` or a data filters.
* `loadHCAMatrix` allows either a vector of `bundle_fqids` or an added filter
operation to the HCA API object
## API object
```{r}
library(HCAMatrixBrowser)
hca <- HCAMatrix()
```
# Quick Start
## with `bundle_fqids`
```{r,warning=FALSE,message=FALSE}
my_fqids <-
c("ffd3bc7b-8f3b-4f97-aa2a-78f9bac93775.2019-05-14T122736.345000Z",
"f69b288c-fabc-4ac8-b50c-7abcae3731bc.2019-05-14T120110.781000Z")
loadHCAMatrix(hca, bundle_fqids = my_fqids)
```
## with filter operations
```{r}
hca1 <- filter(hca, bundle_uuid == "ffd3bc7b-8f3b-4f97-aa2a-78f9bac93775")
## filter print out
filters(hca1)
loadHCAMatrix(hca1)
```
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
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Last synced: about 2 years ago
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- Total issues: 2
- Total pull requests: 0
- Average time to close issues: 11 days
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- Total issue authors: 1
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- Average comments per issue: 1.0
- Average comments per pull request: 0
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Past Year
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- Average time to close issues: N/A
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Top Authors
Issue Authors
- dvantwisk (2)