https://github.com/bioconductor-source/rbowtie
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.1%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: other
- Language: C++
- Default Branch: devel
- Size: 7.62 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Rbowtie
The Rbowtie R package provides an R interface to the
bowtie short-read aligner by
Langmead et al. (2009), as well as to
SpliceMap by Au et al. (2010).
The package contains wrapper functions to create a genome index and to perform
the read alignment to the generated index. These are used by the
QuasR bioconductor package.
We recommend to use the QuasR package instead of using Rbowtie directly.
Source code
The source code for bowtie v1.3.0 was obtained from https://github.com/BenLangmead/bowtie/archive/v1.3.0.tar.gz on November 2, 2020. The folders genomes, reads, doc, indexes and scripts were not included into the package to reduce its size.
Software status
| Platforms | OS | R CMD check | Coverage |
|:----------------:|:----------------:|:----------------:|:----------------:|
| GitHub Actions | Linux/Windows/macOS | 
| 
|
| Bioc (devel) | Multiple | 
| |
| Bioc (release) | Multiple | 
| |
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
Total
- Member event: 1
- Push event: 2
- Create event: 1
Last Year
- Member event: 1
- Push event: 2
- Create event: 1
Dependencies
- actions/cache v1 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- grimbough/bioc-actions/build-install-check v1 composite
- grimbough/bioc-actions/run-BiocCheck v1 composite
- grimbough/bioc-actions/setup-bioc v1 composite
- r-lib/actions/setup-pandoc v2 composite
- utils * imports
- BiocStyle * suggests
- knitr * suggests
- parallel * suggests
- rmarkdown * suggests
- testthat * suggests