https://github.com/bioconductor-source/variantfiltering
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.2%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 5.9 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
VariantFiltering: Filtering of coding and non-coding genetic variants
Current build status
- release 
- development 
Installation
This is the development version of the R/Bioconductor package VariantFiltering. This version is unstable and should be used only to test new features. If you are looking for the release version of this package please go to its package release landing page at http://bioconductor.org/packages/VariantFiltering and follow the instructions there to install it.
If you were really looking for this development version, then to install it you need first to install the development version of R that you can find at http://cran.r-project.org and then type the following instructions from the R shell:
r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("VariantFiltering", version="devel")
Alternatively, you can install it from GitHub using the devtools package.
r
install.packages("devtools")
library(devtools)
install_github("rcastelo/VariantFiltering")
Questions, bug reports and issues
For questions and bug reports regarding the release version of VariantFiltering please use the Bioconductor support site. For bug reports and issues regarding this development version of VariantFiltering please use the GitHub issues link at the top-right of this page (https://github.com/rcastelo/VariantFiltering/issues).
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
Total
Last Year
Dependencies
- BiocGenerics >= 0.25.1 depends
- R >= 3.5.0 depends
- VariantAnnotation >= 1.13.29 depends
- methods * depends
- AnnotationDbi * imports
- BSgenome * imports
- Biobase * imports
- BiocParallel * imports
- Biostrings >= 2.33.11 imports
- DT * imports
- GenomeInfoDb >= 1.3.6 imports
- GenomicFeatures * imports
- GenomicRanges >= 1.19.13 imports
- GenomicScores >= 1.0.0 imports
- Gviz * imports
- IRanges >= 2.3.23 imports
- RBGL * imports
- Rsamtools >= 1.17.8 imports
- S4Vectors >= 0.9.25 imports
- SummarizedExperiment * imports
- graph * imports
- shiny * imports
- shinyTree * imports
- shinyjs * imports
- shinythemes * imports
- stats * imports
- utils * imports
- BSgenome.Hsapiens.1000genomes.hs37d5 * suggests
- BiocStyle * suggests
- MafDb.1Kgenomes.phase1.hs37d5 * suggests
- PolyPhen.Hsapiens.dbSNP131 * suggests
- RUnit * suggests
- SIFT.Hsapiens.dbSNP137 * suggests
- SNPlocs.Hsapiens.dbSNP144.GRCh37 * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- org.Hs.eg.db * suggests
- phastCons100way.UCSC.hg19 * suggests