https://github.com/bioconductor-source/trnadbimport
Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 7 DOI reference(s) in README -
○Academic publication links
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○Institutional organization owner
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○Scientific vocabulary similarity
Low similarity (8.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: gpl-3.0
- Language: R
- Default Branch: devel
- Size: 450 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
tRNAdbImport 
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The tRNAdb and mttRNAdb (Juehling et al. 2009) is a compilation of
tRNA sequences and tRNA genes. It is a follow up version of the database of
Sprinzl et al. (2005).
Using tRNAdbImport the tRNAdb can be accessed as outlined on the website
trna.bioinf.uni-leipzig.de directly via R. The
results are returned as a GRanges object and can be further used in a
BioC context.
Installation
The current version of the tRNAdbImport package is available from Bioconductor.
```{r} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("tRNAdbImport")
Load and attach the package
library("tRNAdbImport") ```
Literature
- Jühling, Frank; Mörl, Mario; Hartmann, Roland K.; Sprinzl, Mathias; Stadler, Peter F.; Pütz, Joern (2009): "TRNAdb 2009: Compilation of tRNA Sequences and tRNA Genes." Nucleic Acids Research 37 (suppl_1): D159–D162. doi:10.1093/nar/gkn772.
- Sprinzl, Mathias; Vassilenko, Konstantin S. (2005): "Compilation of tRNA Sequences and Sequences of tRNA Genes." Nucleic Acids Research 33 (suppl_1): D139–D140. doi:10.1093/nar/gki012.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
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Dependencies
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- GenomicRanges * depends
- Modstrings * depends
- R >= 3.6 depends
- Structstrings * depends
- tRNA * depends
- Biostrings * imports
- IRanges * imports
- S4Vectors * imports
- httr2 * imports
- methods * imports
- stringr * imports
- utils * imports
- xml2 * imports
- BiocGenerics * suggests
- BiocStyle * suggests
- httptest * suggests
- knitr * suggests
- rmarkdown * suggests
- rtracklayer * suggests
- testthat * suggests