https://github.com/bioconductor-source/trna

Science Score: 26.0%

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Low similarity (10.5%) to scientific vocabulary

Last synced: 9 months ago · JSON representation

Repository

Basic Info

Host: GitHub
Owner: bioconductor-source
License: gpl-3.0
Language: R
Default Branch: devel
Size: 527 KB

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Stars: 0
Watchers: 2
Forks: 0
Open Issues: 0
Releases: 0

Created almost 2 years ago · Last pushed almost 2 years ago

Metadata Files

Readme Changelog License

tRNA

The tRNA package allows feature information of tRNAs to be accessed and list of tRNA to be subset based on these features. The main purpose is to unify overlapping functions from the tRNAscanImport and tRNAdbImport packages.

The functionality is currently under development and may change. The package expects a GRanges object with certain columns as input. The following columns are a requirement: tRNA_length, tRNA_type, tRNA_anticodon, tRNA_seq, tRNA_str, tRNA_CCA.end. Outputs of tRNAscanImport and tRNAdbImport meet these requirements.

Installation

The current version of the tRNA package is available from Bioconductor.

```{r} BiocManager::install("tRNA")

Load and attach thepackage

library("tRNA") ```

Functions

Have a look at the vignette for an overview of the functionality. Additional functions are planned to be added in the future.

Owner

Name: (WIP DEV) Bioconductor Packages
Login: bioconductor-source
Kind: organization
Email: maintainer@bioconductor.org

Website: https://bioconductor.org
Repositories: 1
Profile: https://github.com/bioconductor-source

Source code for packages accepted into Bioconductor

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.github/workflows/check-bioc-devel.yml actions

JamesIves/github-pages-deploy-action releases/v4 composite
actions/cache v3 composite
actions/checkout v3 composite
actions/upload-artifact master composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite

.github/workflows/check-bioc.yml actions

JamesIves/github-pages-deploy-action releases/v4 composite
actions/cache v3 composite
actions/checkout v3 composite
actions/upload-artifact master composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite

DESCRIPTION cran

GenomicRanges * depends
R >= 3.5 depends
Structstrings * depends
BiocGenerics * imports
Biostrings * imports
IRanges * imports
Modstrings * imports
S4Vectors * imports
XVector * imports
ggplot2 * imports
methods * imports
scales * imports
stringr * imports
BiocStyle * suggests
knitr * suggests
rmarkdown * suggests
tRNAscanImport * suggests
testthat * suggests

ecosyste.ms

Data

Tools

Indexes

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Open Source Science