https://github.com/bioconductor-source/trare
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (5.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: other
- Language: R
- Default Branch: devel
- Size: 27.2 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
TraRe
TraRe (Transcriptional Rewiring) is an R package which contains the necessary tools to carry out: Identification of module-based gene regulatory networks (GRN); score-based classification of these modules via a rewiring test; visualization of rewired modules to analyze condition-based GRN deregulation and drop out genes recovering via cliques methodology. For each tool, html report can be generated containing useful information about the generated GRN and statistical data about the performed tests. These tools have been developed considering sequenced data (RNA-Seq).
BiorXive
Installation
```{r, eval=FALSE}
if (!requireNamespace("BiocManager")) install.packages("BiocManager") BiocManager::install("TraRe")
```
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
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Dependencies
- R >= 4.0 depends
- BiocParallel * imports
- R.utils * imports
- SummarizedExperiment * imports
- dqrng * imports
- ggplot2 * imports
- glmnet * imports
- gplots * imports
- grDevices * imports
- gtools * imports
- hash * imports
- igraph * imports
- matrixStats * imports
- methods * imports
- pvclust * imports
- scales * imports
- stats * imports
- utils * imports
- vioplot * imports
- viridis * imports
- BiocGenerics * suggests
- BiocStyle * suggests
- RUnit * suggests
- knitr * suggests
- rmarkdown * suggests