https://github.com/bioconductor-source/transmogr
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (9.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 385 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
transmogR 
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This package contains functions for creating a variant-modified reference genome or transcriptome. SNPs, Insertions and Deletions are all supported.
With a generous tip of the hat and deep appreciation to Bill Watterson. Results are expected to be more predictable than for prototype transmogrifiers.
To install the stable version of transmogR from Bioconductor please try the following.
r
if (!require("BiocManager")) {
install.packages("BiocManager")
}
BiocManager::install("transmogR")
Alternatively, the latest build can be installed using
r
if (!require("BiocManager")) {
install.packages("BiocManager")
}
BiocManager::install("smped/transmogR")
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
- Biostrings * depends
- GenomicRanges * depends
- BSgenome * imports
- GenomeInfoDb * imports
- GenomicFeatures * imports
- IRanges * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- VariantAnnotation * imports
- ggplot2 >= 3.5.0 imports
- methods * imports
- parallel * imports
- rlang * imports
- scales * imports
- stats * imports
- BSgenome.Hsapiens.UCSC.hg38 * suggests
- BiocStyle * suggests
- ComplexUpset * suggests
- InteractionSet * suggests
- extraChIPs * suggests
- knitr * suggests
- rmarkdown * suggests
- rtracklayer * suggests
- testthat >= 3.0.0 suggests