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Open Source Science

https://github.com/bioconductor-source/trackviewer

https://github.com/bioconductor-source/trackviewer

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.9%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: bioconductor-source
  • Language: R
  • Default Branch: devel
  • Size: 2.77 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog

README.md

trackViewer

DOI platforms build

A R/Bioconductor package for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

Installation

To install this package, start R and enter:

r library(BiocManager) BiocManager::install("trackViewer")

Documentation

To view documentation of trackViewer, start R and enter: r browseVignettes("trackViewer")

Or view it online at: https://bioconductor.org/packages/release/bioc/vignettes/trackViewer/inst/doc/trackViewer.html

Citation

Please cite the paper below for the trackViewer package.

Ou J. Zhu L. trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data. Nature Methods 16, 453–454 (2019)

Owner

  • Name: (WIP DEV) Bioconductor Packages
  • Login: bioconductor-source
  • Kind: organization
  • Email: maintainer@bioconductor.org

Source code for packages accepted into Bioconductor

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Dependencies

DESCRIPTION cran
  • GenomicRanges * depends
  • R >= 3.5.0 depends
  • grDevices * depends
  • grid * depends
  • methods * depends
  • AnnotationDbi * imports
  • BiocGenerics * imports
  • GenomeInfoDb * imports
  • GenomicAlignments * imports
  • GenomicFeatures * imports
  • Gviz * imports
  • IRanges * imports
  • InteractionSet * imports
  • Rsamtools * imports
  • S4Vectors * imports
  • grImport * imports
  • htmlwidgets * imports
  • rhdf5 * imports
  • rtracklayer * imports
  • scales * imports
  • strawr * imports
  • tools * imports
  • txdbmaker * imports
  • utils * imports
  • BiocStyle * suggests
  • RUnit * suggests
  • TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
  • VariantAnnotation * suggests
  • biomaRt * suggests
  • htmltools * suggests
  • httr * suggests
  • knitr * suggests
  • motifStack * suggests
  • org.Hs.eg.db * suggests
  • rmarkdown * suggests