https://github.com/bioconductor-source/tpp2d
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (7.6%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 2.21 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
TPP2D
Detection of ligand-protein interactions from thermal proteome profiles (DLPTP) by FDR-controlled analysis of 2D-TPP experiments
This package contains functions to analyze 2D-thermal proteome profiles using the DLPTP (detection of ligand-protein interactions from thermal proteome profiles) approach. This is done by fitting two nested models (null and alternative) to the thermal profile of each protein and asking whether the alternative model explains the variance in the data significantly better than the null.
Installation
Installation from Bioconductor (recommended)
The TPP2D package has been accepted into Bioconductor! Therefore, the most reliable way to install it is via BiocManager:
{R}
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TPP2D")
Installation of the development version
{R}
BiocManager::install(“nkurzaw/TPP2D”)
Getting started
The easiest way of learning how to use the TPP2D package is to browse it's vignette:
{R}
library(TPP2D)
browseVignettes("TPP2D")
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
- actions/cache v1 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- r-lib/actions/setup-pandoc master composite
- r-lib/actions/setup-r master composite
- R >= 3.6.0 depends
- dplyr * depends
- methods * depends
- stats * depends
- utils * depends
- BiocParallel * imports
- MASS * imports
- RCurl * imports
- doParallel * imports
- foreach * imports
- ggplot2 * imports
- limma * imports
- openxlsx * imports
- parallel * imports
- stringr * imports
- tidyr * imports
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests