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Open Source Science

https://github.com/bioconductor-source/toxicogx

https://github.com/bioconductor-source/toxicogx

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.7%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: bioconductor-source
  • License: other
  • Language: R
  • Default Branch: devel
  • Size: 80.7 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License

README.md

R build status

Bioc-Release: Bioconductor RELEASE Bioc-Devel: Bioconductor DEVEL

ToxicoGx

A statistical analysis package for use exploring the relationship between toxicity and gene expression in specific cell types. The package includes a specialized object, the ToxicoSet, which allows unified storage of all data related to a specific toxico-genomic study. Methods accepting this object are inlcuded for summarize results and annotaiton, conduct various analyses as well as to visualize the results thereof.

Owner

  • Name: (WIP DEV) Bioconductor Packages
  • Login: bioconductor-source
  • Kind: organization
  • Email: maintainer@bioconductor.org

Source code for packages accepted into Bioconductor

GitHub Events

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Dependencies

.github/workflows/R-CMD-check-bioc-release.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact v2 composite
  • docker/build-push-action v1 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/R-CMD-check-bioc.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact v2 composite
  • docker/build-push-action v1 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action 4.1.4 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • CoreGx * depends
  • R >= 4.1 depends
  • Biobase * imports
  • BiocGenerics * imports
  • BiocParallel * imports
  • S4Vectors * imports
  • SummarizedExperiment * imports
  • assertthat * imports
  • caTools * imports
  • data.table * imports
  • downloader * imports
  • dplyr * imports
  • ggplot2 * imports
  • grDevices * imports
  • graphics * imports
  • jsonlite * imports
  • limma * imports
  • magrittr * imports
  • methods * imports
  • parallel * imports
  • reshape2 * imports
  • scales * imports
  • stats * imports
  • tibble * imports
  • tidyr * imports
  • utils * imports
  • BiocStyle * suggests
  • PharmacoGx * suggests
  • devtools * suggests
  • knitr * suggests
  • markdown * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • tinytex * suggests
  • xtable * suggests