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Open Source Science

https://github.com/bioconductor-source/topdownr

https://github.com/bioconductor-source/topdownr

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.4%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: bioconductor-source
  • License: gpl-3.0
  • Language: R
  • Default Branch: devel
  • Size: 6.87 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog Contributing License Support

README.md

topdownr

Project Status: Active - The project has reached a stable, usable state and is being actively developed. build status codecov.io license

years in bioc bioc downloads Release: build release Devel: build devel <!-- badges: end -->

Installation

r if (!require("BiocManager")) install.packages("BiocManager") BiocManager::install("topdownr")

If you want to install the development version from github (not recommended unless you know what you are doing):

r if (!require("BiocManager")) install.packages("BiocManager") BiocManager::install("sgibb/topdownr")

Documentation

To get started:

r ?"topdownr-package" vignette("data-generation", package="topdownr") vignette("analysis", package="topdownr")

Development documentation: https://sgibb.github.io/topdownr/

Questions

General questions should be asked on the Bioconductor support forum, using topdownr to tag the question. Feel also free to open a GitHub issue, in particular for bug reports.

Contribution

See CONTRIBUTING.md.

Support

See SUPPORT.md.

Owner

  • Name: (WIP DEV) Bioconductor Packages
  • Login: bioconductor-source
  • Kind: organization
  • Email: maintainer@bioconductor.org

Source code for packages accepted into Bioconductor

GitHub Events

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Dependencies

.github/workflows/check-bioc.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact master composite
  • docker/build-push-action v1 composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite
DESCRIPTION cran
  • BiocGenerics >= 0.20.0 depends
  • Biostrings >= 2.42.1 depends
  • ProtGenerics >= 1.10.0 depends
  • R >= 3.5 depends
  • S4Vectors >= 0.12.2 depends
  • methods * depends
  • Biobase * imports
  • MSnbase >= 2.3.10 imports
  • Matrix >= 1.4 imports
  • PSMatch >= 1.6.0 imports
  • ggplot2 >= 2.2.1 imports
  • grDevices * imports
  • mzR >= 2.27.5 imports
  • stats * imports
  • tools * imports
  • utils * imports
  • BiocStyle * suggests
  • knitr * suggests
  • ranger * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • topdownrdata >= 0.2 suggests
  • xml2 * suggests