https://github.com/bioconductor-source/tomoda
Science Score: 13.0%
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○CITATION.cff file
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○.zenodo.json file
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○Scientific vocabulary similarity
Low similarity (4.6%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: other
- Language: R
- Default Branch: devel
- Size: 276 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 2 years ago
· Last pushed almost 2 years ago
Metadata Files
Readme
Changelog
License
README.md
tomoda
tomoda is a R package for tomo-seq data analysis. The main purpose of the package is to find zones with similar transcriptional profiles and spatially expressed genes in a tomo-seq sample. Several visualization functions are available to create high quality and easy-to-modify plots.
Author
Wendao Liu
https://liuwd15.github.io/about
Installation
r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("tomoda")
Issues and bug reports
Please submit issues and bug reports to https://github.com/liuwd15/tomoda/issues.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
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Dependencies
DESCRIPTION
cran
- R >= 4.0.0 depends
- RColorBrewer * imports
- Rtsne * imports
- SummarizedExperiment * imports
- ggplot2 * imports
- ggrepel * imports
- grDevices * imports
- methods * imports
- reshape2 * imports
- stats * imports
- umap * imports
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests