https://github.com/bioconductor-source/tnt
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.1%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 432 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
TnT
TnT is a R package that wraps the TnT javascript libraries to provide track-based visulizations from R. It is useful for displaying genomic features as a simple genome browser, particularly when working with relevant Bioconductor packages.
To install the stable version from biocondcutor, use
R
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("TnT")
Or alternatively, install the latest version from github with
R
devtools::install_github("Marlin-Na/TnT")
To get started, checkout:
- The package vignette Introduction to TnT
- Examples of different track types.
You can also find the package on Bioconductor.
GSoC 2017
This R package was a Google Summer of Code project in 2017, kindly mentored by Toby Dylan Hocking and Miguel Pignatelli, under the organization of R project for statistical computing.
Please see:
- The project link
- Wiki of the project idea
- My blog post as a summary of the project.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
Total
Last Year
Dependencies
- GenomicRanges * depends
- R >= 3.4 depends
- Biobase * imports
- GenomeInfoDb * imports
- IRanges * imports
- S4Vectors * imports
- data.table * imports
- grDevices * imports
- htmlwidgets * imports
- jsonlite * imports
- knitr * imports
- methods * imports
- stats * imports
- utils * imports
- BiocManager * suggests
- GenomicFeatures * suggests
- rmarkdown * suggests
- shiny * suggests
- testthat * suggests