https://github.com/bioconductor-source/tenxxeniumdata
Science Score: 13.0%
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○CITATION.cff file
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○Scientific vocabulary similarity
Low similarity (3.7%) to scientific vocabulary
Last synced: 9 months ago
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Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: mit
- Language: R
- Default Branch: devel
- Size: 23.4 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 2 years ago
· Last pushed almost 2 years ago
Metadata Files
Readme
License
README.md
TENxXeniumData
The TENxXeniumData package aims to contain a collection of Xenium spatial
transcriptomics datasets provided by 10x Genomics. These datasets have been
formatted into the Bioconductor classes, the SpatialExperiment or
SpatialFeatureExperiment (SFE), to facilitate seamless integration into
various applications, including examples, demonstrations, and tutorials.
The constructed data objects include gene expression profiles, per-transcript
location data, centroid, segmentation boundaries
(e.g., cell or nucleus boundaries), and image. More datasets will be added
in later versions.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
DESCRIPTION
cran
- ExperimentHub * depends
- BumpyMatrix * imports
- SpatialExperiment * imports
- SpatialFeatureExperiment * imports
- SummarizedExperiment * imports
- utils * imports
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests