https://github.com/bioconductor-source/swfdr
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (4.4%) to scientific vocabulary
Last synced: 6 months ago
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Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 17.7 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 1 year ago
· Last pushed over 1 year ago
Metadata Files
Readme
README.md
swfdr
Science-wide false discovery rate
swfdr is an R package for dealing with multiple hypothesis testing.
Installation
The package is available through Bioconductor.
library(BiocManager)
BiocManager::install("swfdr")
It is also possible to install in-development versions from github.
library(devtools)
install_github("leekgroup/swfdr")
Example
A minimal working example for using the lm_pi0 and lm_qvalue functions
is as follows
``` library(swfdr) x <- c(rbeta(1000, 0.2, 1), runif(1000, 0, 1)) x.covariate = rep(c(1,2), each=1000)
compute covariate-adjusted pi0 - probability of null hypothesis to be true
x.pi0 = lm_pi0(x, X=x.covariate) x.pi0
compute covariate-adjusted qvalues
x.qvalues <- lm_qvalue(x, X=x.covariate) x.qvalues ```
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
DESCRIPTION
cran
- R >= 3.4 depends
- methods * imports
- splines * imports
- stats * imports
- stats4 * imports
- BiocStyle * suggests
- dplyr * suggests
- ggplot2 * suggests
- knitr * suggests
- qvalue * suggests
- reshape2 * suggests
- rmarkdown * suggests
- testthat * suggests