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Open Source Science

https://github.com/bioconductor-source/sushi

https://github.com/bioconductor-source/sushi

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
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    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.9%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: bioconductor-source
  • Language: R
  • Default Branch: devel
  • Size: 4.31 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog

README.md

Sushi

Tools for visualizing genomics data

Citation

Sushi.r: Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures. Phanstiel DH, Boyle AP, Araya CL, Snyder MP. Bioinformatics, In Review.

Features

Detailed usage examples are available in the Vignette.

Sushi Installation

  1. Install release verson with Bioconductor:

if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("Sushi")

Note: R 3.1 is required for installation via Bioconductor. The newest version of R can be downloaded at (www.r-project.org/). Installation via Bioconductor also requires libcurl and libxml2 which may not be be standard with some Linux distributions and are available for download at (http://curl.haxx.se/libcurl/ and http://xmlsoft.org/, respectively.

  1. Install from source (for previous versions of R >= 2.10):

Download source code from http://www.bioconductor.org/packages/release/bioc/html/Sushi.html

R CMD INSTALL Sushi_X.X.X.tar.gz

  1. The development version of Sushi can be downloaded via Bioconductor

if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install(version = "devel") BiocManager::install("Sushi")

or via source at http://www.bioconductor.org/packages/devel/bioc/html/Sushi.html

Contributors

License

The code is freely available under the GPL (>= 2) license

Owner

  • Name: (WIP DEV) Bioconductor Packages
  • Login: bioconductor-source
  • Kind: organization
  • Email: maintainer@bioconductor.org

Source code for packages accepted into Bioconductor

GitHub Events

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Dependencies

DESCRIPTION cran
  • R >= 2.10 depends
  • biomaRt * depends
  • zoo * depends
  • grDevices * imports
  • graphics * imports