https://github.com/bioconductor-source/suitor
Science Score: 13.0%
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Low similarity (4.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: C
- Default Branch: devel
- Size: 828 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
SUITOR: selecting the number of mutational signatures through cross-validation
Introduction
For the de novo mutational signature analysis,
estimating the correct number of signatures is the crucial starting point,
since it influences all the downstream steps, including extraction of signature profiles,
estimation of signature activities and classification of tumors based on the andestimated activities.
Here we present an R package SUITOR, an unsupervised cross-validation tool to select
the optimal number of signatures.
The two main functions are suitor() and suitorExtractWH().
For more information please refer to the package user maunual and vignette.
Installation
To install from Bioconductor:
r
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("SUITOR")
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
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Dependencies
- R >= 4.2.0 depends
- BiocParallel * imports
- ggplot2 * imports
- graphics * imports
- stats * imports
- utils * imports
- BiocGenerics * suggests
- BiocManager * suggests
- BiocStyle * suggests
- MutationalPatterns * suggests
- RUnit * suggests
- devtools * suggests
- knitr * suggests
- rmarkdown * suggests