https://github.com/bioconductor-source/structuralvariantannotation
https://github.com/bioconductor-source/structuralvariantannotation
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (3.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: gpl-3.0
- Language: R
- Default Branch: devel
- Size: 22 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
StructuralVariantAnnotation
StructuralVariantAnnotation contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.
Installation
The StructuralVariantAnnotation package can be installed using BioConductor:
if (!requireNamespace("BiocManager", quietly=TRUE)) {
install.packages("BiocManager")
}
BiocManager::install("StructuralVariantAnnotation")
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
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Last Year
Dependencies
- BiocGenerics * depends
- GenomicRanges * depends
- R >= 4.1.0 depends
- VariantAnnotation * depends
- rtracklayer * depends
- Biostrings * imports
- GenomeInfoDb * imports
- GenomicFeatures * imports
- IRanges * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- assertthat * imports
- dplyr * imports
- methods * imports
- pwalign * imports
- rlang * imports
- stringr * imports
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- biovizBase * suggests
- devtools * suggests
- ggbio * suggests
- ggplot2 * suggests
- knitr * suggests
- rmarkdown * suggests
- roxygen2 * suggests
- testthat >= 2.1.0 suggests
- tidyverse * suggests