https://github.com/bioconductor-source/stexampledata
Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
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○.zenodo.json file
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Found 1 DOI reference(s) in README -
○Academic publication links
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○Scientific vocabulary similarity
Low similarity (9.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: mit
- Language: R
- Default Branch: devel
- Size: 146 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
STexampleData
The STexampleData package contains a collection of spatial transcriptomics datasets, which have been formatted into the SpatialExperiment Bioconductor class, for use in examples, demonstrations, and tutorials. The datasets are from several different technological platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.
The STexampleData package is available from Bioconductor.
A vignette containing examples and documentation is available from Bioconductor.
Installation
The release version of the STexampleData package can be installed from Bioconductor:
install.packages("BiocManager")
BiocManager::install("STexampleData")
The development version can be installed from the development version of Bioconductor (see Bioconductor website for details) or from GitHub:
install.packages("remotes")
remotes::install_github("lmweber/STexampleData")
Citation
- Righell D.*, Weber L.M.*, Crowell H.L.*, Pardo B., Collado-Torres L., Ghazanfar S., Lun A.T.L., Hicks S.C.*, and Risso D.* (2022). SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor. Bioinformatics, btac299.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v4 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- ExperimentHub * depends
- SingleCellExperiment * depends
- SpatialExperiment * depends
- utils * imports
- BiocStyle * suggests
- BumpyMatrix * suggests
- HDF5Array * suggests
- knitr * suggests
- rmarkdown * suggests