https://github.com/bioconductor-source/stager
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
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○.zenodo.json file
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○Academic publication links
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○Scientific vocabulary similarity
Low similarity (7.2%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: HTML
- Default Branch: devel
- Size: 1.09 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
stageR
This is the repository for the stageR package. stageR allows user-friendly automated stage-wise analysis of high-throughput genomic data.
See the Bioconductor website to install the package through Bioconductor. To install the package from the GitHub repository in R, please use
library(devtools)
install_github("statOmics/stageR")
The repository containing all code required to reproduce the analyses in the paper can be found here.
Note, that we discovered a bug in the ‘holm’ and ‘user’ corrections for the ‘stageWiseAdjustment’ function that was introduced when making changes for Bioconductor submission. The bug was present in version 0.99.08 until version 1.1.1. It was also present in the Bioconductor 3.6 release branch.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
- R >= 3.4 depends
- SummarizedExperiment * depends
- methods * imports
- stats * imports
- Biobase * suggests
- BiocStyle * suggests
- DEXSeq * suggests
- edgeR * suggests
- knitr * suggests
- limma * suggests
- methods * suggests
- rmarkdown * suggests
- testthat * suggests