https://github.com/bioconductor-source/ssnappy
Science Score: 13.0%
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○CITATION.cff file
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○Scientific vocabulary similarity
Low similarity (3.7%) to scientific vocabulary
Last synced: 9 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 50.1 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 2 years ago
· Last pushed almost 2 years ago
Metadata Files
Readme
Changelog
README.md
sSNAPPY: Single Sample directioNAl Pathway Perturbation analYsis
sSNAPPY is a package for computing directional pathway perturbation scores from logCPM in RNA-seq data. The final output can be used to test the significance of pathway perturbation at both individual-sample and overall treatment levels.
Installation Instructions
To install this package, please use BiocManager.
r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("sSNAPPY")
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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.github/workflows/check-bioc.yml
actions
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.github/workflows/pkgdown.yaml
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- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION
cran
- R >= 4.3.0 depends
- ggplot2 * depends
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- dplyr >= 1.1 imports
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