https://github.com/bioconductor-source/spatialcpie
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: mit
- Language: R
- Default Branch: devel
- Size: 2.59 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
SpatialCPie
SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationship between clusters in order to guide the user during cluster identification, selection and further downstream applications.
Installation
Using devtools, execute the following from the R console:
r
devtools::install_github(
"jbergenstrahle/SpatialCPie"
,build_opts=c("--no-resave-data", "--no-manual")
)
Bioconductor version
SpatialCPie is currently on the developmental version of Bioconductor (3.9): https://bioconductor.org/packages/devel/bioc/html/SpatialCPie.html
Usage
See the vignette:
r
vignette("SpatialCPie", package="SpatialCPie")
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
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Last Year
Dependencies
- R >= 3.6 depends
- SummarizedExperiment >= 1.10.1 imports
- colorspace >= 1.3 imports
- data.table >= 1.12.2 imports
- digest >= 0.6.21 imports
- dplyr >= 0.7.6 imports
- ggforce >= 0.3.0 imports
- ggiraph >= 0.5.0 imports
- ggplot2 >= 3.0.0 imports
- ggrepel >= 0.8.0 imports
- grid >= 3.5.1 imports
- igraph >= 1.2.2 imports
- lpSolve >= 5.6.13 imports
- methods >= 3.5.0 imports
- purrr >= 0.2.5 imports
- readr >= 1.1.1 imports
- rlang >= 0.2.2 imports
- shiny >= 1.1.0 imports
- shinyWidgets >= 0.4.8 imports
- shinycssloaders >= 0.2.0 imports
- shinyjs >= 1.0 imports
- stats >= 3.6.0 imports
- tibble >= 1.4.2 imports
- tidyr >= 0.8.1 imports
- tidyselect >= 0.2.4 imports
- tools >= 3.6.0 imports
- utils >= 3.5.0 imports
- zeallot >= 0.1.0 imports
- BiocStyle >= 2.8.2 suggests
- jpeg >= 0.1 suggests
- knitr >= 1.20 suggests
- rmarkdown >= 1.10 suggests
- testthat >= 2.0.0 suggests