https://github.com/bioconductor-source/spacemarkers
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 4 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: other
- Language: R
- Default Branch: devel
- Size: 22.1 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
SpaceMarkers
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
Citation
If you use the SpaceMarkers software please cite:
Atul Deshpande, Melanie Loth, et al., Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces. Cell Systems, April 2023. https://doi.org/10.1016/j.cels.2023.03.004
Installation
You can install the latest Bioconductor release from SpaceMarkers using the code below. ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("SpaceMarkers")
You can install the development version of SpaceMarkers directly from the Github source.
install.packages("remotes")
remotes::installgithub("DeshpandeLab/SpaceMarkers", dependencies = TRUE, buildvignettes = TRUE)
```
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
Total
Last Year
Dependencies
- R >= 4.4.0 depends
- Matrix * imports
- ape * imports
- hdf5r * imports
- jsonlite * imports
- matrixStats * imports
- matrixTests * imports
- methods * imports
- qvalue * imports
- rstatix * imports
- spatstat.explore * imports
- spatstat.geom * imports
- stats * imports
- utils * imports
- BiocStyle * suggests
- CoGAPS * suggests
- RColorBrewer * suggests
- cowplot * suggests
- data.table * suggests
- devtools * suggests
- dplyr * suggests
- ggplot2 * suggests
- hrbrthemes * suggests
- knitr * suggests
- readbitmap * suggests
- rjson * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
- viridis * suggests
- rocker/tidyverse 4 build