https://github.com/bioconductor-source/smartid
Science Score: 13.0%
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Low similarity (10.1%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: other
- Language: R
- Default Branch: devel
- Size: 1.04 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
smartid: Scoring and MARker identification method based on modified Tf-IDf
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An R package for automatically identify group specific signature and score cells based on given gene sets on scRNA data.
smartid is an R package designed for automated identification of signatures of interest. The package is developed for generating specific signature genes from multiple groups based on modified TF-IDF approach, which is good at finding markers for rare populations and pay more attention to the genes without high expression but with high variance across groups.
This package is particularly useful for the marker identification of novel or rare group populations in various biological and medical applications, including cancer research and developmental biology.
Check out the standard demonstration.
Installation
You can install the development version of smartid like so:
``` r
install from GitHub
devtools::install_github("DavisLaboratory/smartid") ```
smartid can be installed from Bioconductor directly as follows:
``` r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("smartid") ```
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v4 composite
- actions/upload-artifact master composite
- docker/build-push-action v1 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- R >= 4.4 depends
- Matrix * imports
- SummarizedExperiment * imports
- dplyr * imports
- ggplot2 * imports
- graphics * imports
- mclust * imports
- methods * imports
- mixtools * imports
- sparseMatrixStats * imports
- stats * imports
- tidyr * imports
- utils * imports
- BiocStyle * suggests
- UpSetR * suggests
- dbscan * suggests
- ggpubr * suggests
- knitr * suggests
- rmarkdown * suggests
- scater * suggests
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- testthat >= 3.0.0 suggests
- tidytext * suggests