https://github.com/bioconductor-source/slingshot
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.9%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 260 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
R package: slingshot
Provides functions for inferring continuous, branching lineage structures in low-dimensional data. Slingshot was designed to model developmental trajectories in single-cell RNA sequencing data and serve as a component in an analysis pipeline after dimensionality reduction and clustering. It is flexible enough to handle arbitrarily many branching events and allows for the incorporation of prior knowledge through supervised graph construction.
Installation
r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("kstreet13/slingshot")
Python Version
An implementation of the Slingshot algorithm in python can be found here: https://github.com/mossjacob/pyslingshot
Issues and bug reports
Please use https://github.com/kstreet13/slingshot/issues to submit issues, bug reports, and comments.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
Total
Last Year
Dependencies
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v4 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- R >= 4.0 depends
- TrajectoryUtils * depends
- princurve >= 2.0.4 depends
- stats * depends
- S4Vectors * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- grDevices * imports
- graphics * imports
- igraph * imports
- matrixStats * imports
- methods * imports
- BiocGenerics * suggests
- BiocStyle * suggests
- DelayedMatrixStats * suggests
- RColorBrewer * suggests
- clusterExperiment * suggests
- covr * suggests
- knitr * suggests
- mclust * suggests
- mgcv * suggests
- rgl * suggests
- rmarkdown * suggests
- testthat * suggests
- uwot * suggests