https://github.com/bioconductor-source/slalom
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 43.9 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
slalom
This package is an R/C++ implementation of the factorial single-cell latent variable model developed by Buettner et al (Genome Biology, 2017).
The slalom package is available Bioconductor, so the most reliable way
to install the package is to use the usual Bioconductor method:
```{R}
try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("slalom") ```
For details of how to use slalom, please consult the vignette and
package documentation.
Davis McCarthy and Florian Buettner, October 2017
(on behalf of slalom and f-scLVM authors and contributors)
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
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Dependencies
- R >= 4.0 depends
- BH * imports
- GSEABase * imports
- Rcpp >= 0.12.8 imports
- RcppArmadillo * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- ggplot2 * imports
- grid * imports
- methods * imports
- rsvd * imports
- stats * imports
- BiocStyle * suggests
- knitr * suggests
- rhdf5 * suggests
- rmarkdown * suggests
- scater * suggests
- testthat * suggests