https://github.com/bioconductor-source/sctgif
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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○Scientific vocabulary similarity
Low similarity (5.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: HTML
- Default Branch: devel
- Size: 8.8 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
scTGIF
Quality control and cell type annotation for unannotated single-cell RNA-Seq data
Installation of Dependent Packages
```r
CRAN
install.packages("BiocManager", repos="http://cran.r-project.org")
Bioconductor
library("BiocManager") BiocManager::install( c("GSEABase", "Biobase", "SingleCellExperiment", "BiocStyle", "plotly", "tagcloud", "knitr", "msigdbr", "rmarkdown", "Rcpp", "S4Vectors", "SummarizedExperiment", "RColorBrewer", "nnTensor", "scales", "testthat"), update=TRUE, ask=FALSE) ```
Installation
r
git clone https://github.com/rikenbit/scTGIF/
R CMD INSTALL scTGIF
or type the code below in the R console window
r
install.packages("devtools", repos="http://cran.r-project.org")
library(devtools)
devtools::install_github("rikenbit/scTGIF")
Prerequisites
- R (3.6.0 or higher)
- pandoc (1.12.3 or higher)
License
Copyright (c) 2019 Koki Tsuyuzaki and RIKEN Bioinformatics Research Unit Released under the Artistic License 2.0.
Authors
- Koki Tsuyuzaki
- Itoshi Nikaido
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
Total
Last Year
Dependencies
- R >= 3.6.0 depends
- Biobase * imports
- BiocStyle * imports
- GSEABase * imports
- RColorBrewer * imports
- Rcpp * imports
- S4Vectors * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- ggplot2 * imports
- grDevices * imports
- graphics * imports
- igraph * imports
- knitr * imports
- methods * imports
- msigdbr * imports
- nnTensor * imports
- plotly * imports
- rmarkdown * imports
- scales * imports
- schex * imports
- tagcloud * imports
- tibble * imports
- utils * imports
- testthat * suggests