https://github.com/bioconductor-source/scdotplot
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 22.5 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
scDotPlot
Dot plots of single-cell RNA-seq data allow for an examination of the relationships between cell groupings (e.g. clusters) and marker gene expression. The scDotPlot package offers a unified approach to perform a hierarchical clustering analysis and add multiple annotations to the columns and/or rows of a scRNA-seq dot plot. It works with SingleCellExperiment and Seurat objects as well as data frames.
Installation
scDotPlot can be installed from Bioconductor:
``` r if (!requireNamespace("BiocManager", quietly = TRUE)){ install.packages("BiocManager") }
BiocManager::install("scDotPlot") ```
To install the development version directly from GitHub:
```r if(!requireNamespace("remotes", quietly = TRUE)){ install.packages("remotes") }
remotes::install_github("ben-laufer/scDotPlot") ```
Examples
See the package vignette.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
- R >= 4.4.0 depends
- BiocGenerics * imports
- Seurat * imports
- SingleCellExperiment * imports
- aplot * imports
- cli * imports
- dplyr * imports
- ggplot2 * imports
- ggsci * imports
- ggtree * imports
- grDevices * imports
- magrittr * imports
- purrr * imports
- rlang * imports
- scales * imports
- scater * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- AnnotationDbi * suggests
- BiocStyle * suggests
- SeuratObject * suggests
- knitr * suggests
- rmarkdown * suggests
- scRNAseq * suggests
- scran * suggests
- scuttle * suggests
- testthat * suggests
- vdiffr * suggests