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Open Source Science

https://github.com/bioconductor-source/sccomp

https://github.com/bioconductor-source/sccomp

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.9%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: bioconductor-source
  • Language: R
  • Default Branch: devel
  • Size: 61.4 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme

README.Rmd 

---
title: "sccomp - Outlier-aware and count-based compositional analysis of single-cell data"
output: github_document
always_allow_html: true
editor_options: 
  markdown: 
    wrap: 72
---



[![Lifecycle:maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing)
[![R build
status](https://github.com/stemangiola/tidyseurat/workflows/R-CMD-check/badge.svg)](https://github.com/stemangiola/tidyseurat/actions/)




 Watch the video


```{r echo=FALSE}
knitr::opts_chunk$set( fig.path = "inst/figures/")
```

```{r child="man/fragments/intro.Rmd"}
```

## The old framework

The new tidy framework was introduced in 2024, two, understand the differences and improvements. Compared to the old framework, please read this [blog post](https://tidyomics.github.io/tidyomicsBlog/post/2023-12-07-tidy-sccomp/).

Owner

  • Name: (WIP DEV) Bioconductor Packages
  • Login: bioconductor-source
  • Kind: organization
  • Email: maintainer@bioconductor.org

Source code for packages accepted into Bioconductor

GitHub Events

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Dependencies

.github/workflows/rworkflows.yml actions
  • neurogenomics/rworkflows master composite
DESCRIPTION cran
  • R >= 4.2.0 depends
  • extraDistr * enhances
  • furrr * enhances
  • Rcpp >= 0.12.0 imports
  • RcppParallel >= 5.0.1 imports
  • SeuratObject * imports
  • SingleCellExperiment * imports
  • boot * imports
  • dplyr * imports
  • forcats * imports
  • ggplot2 * imports
  • ggrepel * imports
  • glue * imports
  • lifecycle * imports
  • magrittr * imports
  • methods * imports
  • parallel * imports
  • patchwork * imports
  • purrr * imports
  • readr * imports
  • rlang * imports
  • rstan >= 2.26.0 imports
  • rstantools >= 2.1.1 imports
  • scales * imports
  • stats * imports
  • stringr * imports
  • tibble * imports
  • tidyr * imports
  • tidyselect * imports
  • utils * imports
  • BiocStyle * suggests
  • knitr * suggests
  • loo * suggests
  • markdown * suggests
  • prettydoc * suggests
  • testthat >= 3.0.0 suggests
  • tidySingleCellExperiment * suggests
  • tidyseurat * suggests