https://github.com/bioconductor-source/rtdetect
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Scientific vocabulary similarity
Low similarity (0.5%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 21.1 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 2 years ago
· Last pushed almost 2 years ago
Metadata Files
Readme
Changelog
README.md
RTDetect
A R package for detecting retrotransposed transcripts (RTs) from Variant Call Format (VCF).
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
Total
Last Year
Dependencies
DESCRIPTION
cran
- BiocGenerics * depends
- GenomicRanges * depends
- R >= 4.1 depends
- StructuralVariantAnnotation * depends
- VariantAnnotation * depends
- rtracklayer * depends
- Biostrings * imports
- GenomeInfoDb * imports
- GenomicFeatures * imports
- assertthat * imports
- dplyr * imports
- methods * imports
- rlang * imports
- stringr * imports
- utils * imports
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- IRanges * suggests
- S4Vectors * suggests
- SummarizedExperiment * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- circlize * suggests
- covr * suggests
- devtools * suggests
- ggplot2 * suggests
- knitr * suggests
- plyranges * suggests
- roxygen2 * suggests
- stats * suggests
- testthat >= 2.1.0 suggests
- tictoc * suggests