https://github.com/bioconductor-source/rsffreader
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.8%) to scientific vocabulary
Last synced: 6 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: C
- Default Branch: devel
- Size: 4.02 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 1 year ago
· Last pushed over 1 year ago
Metadata Files
Readme
README.md
rSFFreader
rSFFreader is a R package to read in and manipulate high throughput sequence data stored in the SFF file format. Currently Roche 454 sequencers and Life Sciences Ion Torrent sequencers output data in this format.
Specificiation are written such that they abide by the description http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=formats#sff
Future development will include
Writing out SFF files Reading in flowgrams Integration of flowgrams with sequence data
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
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Dependencies
DESCRIPTION
cran
- ShortRead >= 1.23.17 depends
- Biostrings * imports
- IRanges * imports
- methods * imports
- xtable * suggests