https://github.com/bioconductor-source/rpx
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.1%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 1.19 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
R Interface to the ProteomeXchange Repository
Thre rpx package is a simple programmatic interface to proteomics
data available in the ProteomeXchange repository. It uses a
ProteomeXchange identifier such as PXD000001 to find and download
files associated with that project. The official Bioconductor is
here. The
GitHub page allows to browse the documentation and the vignette.
Installation
To install the version matching your local R installation from the Bioconductor repository:
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("rpx")
And to install the very latest version from GitHub:
BiocManager::install("lgatto/rpx")
For a similar python-based software, see
ppx by Will Fondrie.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
- actions/cache v1 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- R >= 3.5.0 depends
- methods * depends
- BiocFileCache * imports
- RCurl * imports
- curl * imports
- jsonlite * imports
- utils * imports
- xml2 * imports
- BiocStyle * suggests
- Biostrings * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests
- tibble * suggests