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Open Source Science

https://github.com/bioconductor-source/rols

https://github.com/bioconductor-source/rols

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: bioconductor-source
  • Language: R
  • Default Branch: devel
  • Size: 1.16 MB
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  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog

README.md

codecov

The Ontology Lookup Service

The Ontology Lookup Service (OLS), developed at the European Bioinformatics Institute (EBI), is a unified web interface to query multiple ontologies from a single location. The new version of the OLS uses a REST API.

The rols package uses functionality from the httr package to query the OLS directly from R.

See the package's page on GitHub for details, documentation and vignette.

Installation

rols is available from the Bioconductor repository. The package and its dependencies can be installed

if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("rols")

See also the rols Bioconductor page for on-line access to the vignette and the reference manual.

Help

  • rols comes with plenty of documentation. Have a start with the vignette vignette("rols", package="rols").

  • Please direct your questions to the Bioconductor support site.

  • For feature requests and bug reports, use GitHub issues

Owner

  • Name: (WIP DEV) Bioconductor Packages
  • Login: bioconductor-source
  • Kind: organization
  • Email: maintainer@bioconductor.org

Source code for packages accepted into Bioconductor

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Dependencies

.github/workflows/check-bioc.yml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • actions/upload-artifact master composite
DESCRIPTION cran
  • methods * depends
  • Biobase * imports
  • BiocGenerics >= 0.23.1 imports
  • httr2 * imports
  • jsonlite * imports
  • utils * imports
  • BiocStyle >= 2.5.19 suggests
  • DT * suggests
  • GO.db * suggests
  • knitr >= 1.1.0 suggests
  • lubridate * suggests
  • rmarkdown * suggests
  • testthat * suggests