https://github.com/bioconductor-source/rnamodr.alkanilineseq
https://github.com/bioconductor-source/rnamodr.alkanilineseq
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○Scientific vocabulary similarity
Low similarity (6.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 1.9 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
RNAmodR.AlkAnilineSeq 
RNAmodR.AlkAnilineSeq uses classes and workflows from RNAmodR to detect
m7G, m3C and D in RNASeq data specifically treated according to the
AlkAnilineSeq protocol.
The vignette from the RNAmodR.AlkAnilineSeq package provides details on the
specific analysis of AlkAnilineSeq data. Have a look at the vignette from the
RNAmodR package for a general description on the provided workflows.
Installation
The current version of the RNAmodR.AlkAnilineSeq package is available from Bioconductor.
``` if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("RNAmodR.AlkAnilineSeq") library(RNAmodR.AlkAnilineSeq) ```
Literature
- Marchand, Virginie, Lilia Ayadi, Felix G. M. Ernst, Jasmin Hertler, Valérie Bourguignon-Igel, Adeline Galvanin, Annika Kotter, Mark Helm, Denis L. J. Lafontaine, and Yuri Motorin. 2018. “AlkAniline-Seq: Profiling of m7G and m3C Rna Modifications at Single Nucleotide Resolution.” Angewandte Chemie International Edition 57 (51): 16785–90. https://doi.org/10.1002/anie.201810946.
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
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Last Year
Dependencies
- R >= 4.0 depends
- RNAmodR >= 1.5.3 depends
- BiocGenerics * imports
- GenomicRanges * imports
- Gviz * imports
- IRanges * imports
- S4Vectors * imports
- methods * imports
- BiocStyle * suggests
- Biostrings * suggests
- RNAmodR.Data * suggests
- knitr * suggests
- rmarkdown * suggests
- rtracklayer * suggests
- testthat * suggests