https://github.com/bioconductor-source/ribocrypt
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.7%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: mit
- Language: R
- Default Branch: devel
- Size: 4.34 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
RiboCrypt: R Package for interactive visualization and browsing NGS data.
Online app
See our webpage containing thousands of Ribosome profiling datasets to explore!
Installation
We advice you to use github devel version, as this package is under heavy development, to not lose out on new features!
Package is available from bioconductor (3.16, R version >= 4.0.0)
r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("RiboCrypt")
Development version on bioconductor (3.17, R version >= 4.0.0)
r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("RiboCrypt", version = "devel")
Package is also available here on github
r
if (!requireNamespace("devtools", quietly=TRUE))
install.packages("devtools")
devtools::install_github("m-swirski/RiboCrypt")
Tutorials
For extensive tutorials, see bioconductor help tutorials (vignettes):
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
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Last Year
Dependencies
- ORFik >= 1.13.12 depends
- R >= 3.6.0 depends
- BiocGenerics * imports
- BiocParallel * imports
- Biostrings * imports
- GenomeInfoDb * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- IRanges * imports
- NGLVieweR * imports
- RCurl * imports
- bslib * imports
- data.table * imports
- dplyr * imports
- ggplot2 * imports
- htmlwidgets * imports
- httr * imports
- jsonlite * imports
- knitr * imports
- markdown * imports
- plotly * imports
- rlang * imports
- shiny * imports
- shinycssloaders * imports
- shinyhelper * imports
- shinyjqui * imports
- stringr * imports
- BSgenome * suggests
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- BiocStyle * suggests
- rmarkdown * suggests
- testthat * suggests