https://github.com/bioconductor-source/rcwlpipelines
Science Score: 13.0%
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○CITATION.cff file
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○Scientific vocabulary similarity
Low similarity (5.2%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 1.36 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 2 years ago
· Last pushed almost 2 years ago
Metadata Files
Readme
Changelog
README.md
RcwlPipelines
The RcwlPipelines package manages a collection of Bioinformatics tools and pipeline recipes based on Rcwl. The pre-built and pre-tested tools and pipelines are highly modularized with easy customization to meet different bioinformatics data analysis needs.
Installation
The package can be installed from Bioconductor (>= 3.9):
``` r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RcwlPipelines")
Or from github
BiocManager::install("rworkflow/RcwlPipelines") ```
Get started
r
cwlUpdate()
cwlSearch("STAR")
STAR <- cwlLoad("tl_STAR")
User Guide
r
vignette(package = "RcwlPipelines")
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
GitHub Events
Total
Last Year
Dependencies
.github/workflows/check-standard.yaml
actions
- actions/checkout v1 composite
DESCRIPTION
cran
- BiocFileCache * depends
- R >= 3.6 depends
- Rcwl * depends
- S4Vectors * imports
- git2r * imports
- httr * imports
- methods * imports
- rappdirs * imports
- utils * imports
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests