https://github.com/bioconductor-source/rcellminer

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
○
.zenodo.json file
○
DOI references
○
Academic publication links
○
Academic email domains
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (7.8%) to scientific vocabulary

Last synced: 9 months ago · JSON representation

Repository

Basic Info

Host: GitHub
Owner: bioconductor-source
License: lgpl-3.0
Language: R
Default Branch: devel
Size: 6.46 MB

Statistics

Stars: 0
Watchers: 2
Forks: 0
Open Issues: 0
Releases: 0

Created almost 2 years ago · Last pushed almost 2 years ago

Metadata Files

Readme Changelog License

README.md

RCellminer

This R package provide access to the data and functions to analyze data from CellMiner.

Installation

Install from GitHub

setRepositories(ind=1:6)
options(repos="http://cran.rstudio.com/")

if (!require("devtools")) install.packages("devtools")

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")

if (!require("Biobase")) {
    BiocManager::install()
}

BiocManager::install("BiocStyle")

library(devtools)

# Optional for interactive plots
install_github('rCharts', 'ramnathv')

install_github("cannin/rcellminer",
                  build_vignette=FALSE,
                  dependencies=TRUE,
                  args="--no-multiarch",
                  ref="master")

install_github("github/rcellminerData",
                  build_vignette=FALSE,
                  dependencies=TRUE,
                  args="--no-multiarch",
                  ref="master")

Install from local

Open Project

Open .Rproj file in RStudio

Install Dependencies

if (require("devtools")) install.packages("devtools")

setRepositories(ind=1:6)
library(devtools)

install_deps(".")

Run Vignette

Open vignette (Rmd files) from vignettes/ folder and use "Knit HTML" button to generate the HTML file.

Owner

Name: (WIP DEV) Bioconductor Packages
Login: bioconductor-source
Kind: organization
Email: maintainer@bioconductor.org

Website: https://bioconductor.org
Repositories: 1
Profile: https://github.com/bioconductor-source

Source code for packages accepted into Bioconductor

GitHub Events

Total

Last Year

Dependencies

DESCRIPTION cran

Biobase * depends
R >= 3.2 depends
rcellminerData >= 2.0.0 depends
ggplot2 * imports
gplots * imports
methods * imports
shiny * imports
stats * imports
stringr * imports
utils * imports
BiocGenerics * suggests
BiocStyle * suggests
RColorBrewer * suggests
doSNOW * suggests
foreach * suggests
glmnet * suggests
heatmaply * suggests
jsonlite * suggests
knitr * suggests
parallel * suggests
rmarkdown * suggests
sqldf * suggests
testthat * suggests

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science