https://github.com/bioconductor-source/qsutils
Science Score: 13.0%
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Low similarity (3.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- License: gpl-2.0
- Language: R
- Default Branch: devel
- Size: 1.58 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
QSutils
Set of utility functions in viral quasispecies analysis with NGS data. Most are equally usefull in metagenomic studies. There are three main types of functions: (1) data manipulation and exploration; functions useful in converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and to visualize haplotype alignments. (2) diversity indices; functions to compute diversities and entropies; incidence, abundance and fuctional indices are considered. (3) data simulation; functions useful in generating random viral quasispecies data.
How to install the package
```{r,message=FALSE} library(devtools) install_git("https://github.com/VHIRHepatiques/QSutils")
library(QSutils) ```
Contact Information
Address any question/suggestion to Mercedes Guerrero-Murillo mergumu@gmail.com
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
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Dependencies
- BiocGenerics * depends
- Biostrings * depends
- R >= 3.5 depends
- methods * depends
- pwalign * depends
- ape * imports
- psych * imports
- stats * imports
- BiocStyle * suggests
- ggplot2 * suggests
- knitr * suggests
- rmarkdown * suggests