https://github.com/biocore/micov - Point release and metadata extraction.

What's Changed

• Binning poke by @wasade in https://github.com/biocore/micov/pull/35
• Allow features to keep to be null by @wasade in https://github.com/biocore/micov/pull/36
• Extract position metadata by @wasade in https://github.com/biocore/micov/pull/37

Full Changelog: https://github.com/biocore/micov/compare/2025.2...2025.3

- Python
Published by wasade over 1 year ago

https://github.com/biocore/micov - 2025.2

What's Changed

• add support for sam, sam.gz, and sam.xz in micov compress by @sherlyn99 in https://github.com/biocore/micov/pull/9
• Compress from bed by @wasade in https://github.com/biocore/micov/pull/11
• WIP: General items by @wasade in https://github.com/biocore/micov/pull/12
• PERF: rechunk on concat by @wasade in https://github.com/biocore/micov/pull/14
• fixed typo and added taxonomy to micov compress by @sherlyn99 in https://github.com/biocore/micov/pull/13
• extend compress to work with an input directory by @sherlyn99 in https://github.com/biocore/micov/pull/15
• Restore stdin by @wasade in https://github.com/biocore/micov/pull/17
• add micov bin for single genome of interest by @sherlyn99 in https://github.com/biocore/micov/pull/18
• Unscaled cumulative plots, and cumulative with a null curve via Monte by @wasade in https://github.com/biocore/micov/pull/19
• Decompose cumulative curves, decompose and generalize Monte Carlo curves by @wasade in https://github.com/biocore/micov/pull/21
• Cleanup by @wasade in https://github.com/biocore/micov/pull/22
• Implement genome ranking functionality for position plot genomes by @sherlyn99 in https://github.com/biocore/micov/pull/25
• Add readme by @sherlyn99 in https://github.com/biocore/micov/pull/24
• Add conda yml file by @cguccione in https://github.com/biocore/micov/pull/26
• Refactoring by @wasade in https://github.com/biocore/micov/pull/27
• pairwise ks by @wasade in https://github.com/biocore/micov/pull/28
• Improved position plots by @wasade in https://github.com/biocore/micov/pull/29
• Genome rank by @sherlyn99 in https://github.com/biocore/micov/pull/30
• add genome ranking code by @sherlyn99 in https://github.com/biocore/micov/pull/32
• Allow region slicing by @wasade in https://github.com/biocore/micov/pull/31
• Remove setup.py by @wasade in https://github.com/biocore/micov/pull/33
• Project items by @wasade in https://github.com/biocore/micov/pull/34

New Contributors

• @sherlyn99 made their first contribution in https://github.com/biocore/micov/pull/9
• @wasade made their first contribution in https://github.com/biocore/micov/pull/11
• @cguccione made their first contribution in https://github.com/biocore/micov/pull/26

Full Changelog: https://github.com/biocore/micov/commits/2025.2

- Python
Published by wasade over 1 year ago