https://github.com/biocore/improved-octo-waddle - Allow Cython3, other minor changes

What's Changed

• build against cy3 by @wasade in https://github.com/biocore/improved-octo-waddle/pull/60
• add simple load mechanism by @wasade in https://github.com/biocore/improved-octo-waddle/pull/50
• Add check from @fedarko, fixes #48 by @wasade in https://github.com/biocore/improved-octo-waddle/pull/61

Full Changelog: https://github.com/biocore/improved-octo-waddle/compare/1.0.7...1.0.8

- Jupyter Notebook
Published by wasade 11 months ago

https://github.com/biocore/improved-octo-waddle - Remove skbio 0.6.0 pin, account for a np 2.0 sum semantics change

What's Changed

• Update pins, use numpy 2.0 safe sum by @wasade in https://github.com/biocore/improved-octo-waddle/pull/56

Full Changelog: https://github.com/biocore/improved-octo-waddle/compare/1.0.6...1.0.7

- Jupyter Notebook
Published by wasade over 1 year ago

https://github.com/biocore/improved-octo-waddle - Removes GPL code

GPL code is now forked into https://github.com/biocore/improved-octo-waddle-gpl

- Jupyter Notebook
Published by wasade about 3 years ago

https://github.com/biocore/improved-octo-waddle - ...actually carry over insert_multifurcation

- Jupyter Notebook
Published by wasade almost 4 years ago

https://github.com/biocore/improved-octo-waddle - bug fix

Insert multifurcation was not being carried along

- Jupyter Notebook
Published by wasade almost 4 years ago

https://github.com/biocore/improved-octo-waddle - 1.0.3

What's Changed

• conv and write edges by @wasade in https://github.com/biocore/improved-octo-waddle/pull/43
• tweak our monkey patch by @wasade in https://github.com/biocore/improved-octo-waddle/pull/44
• handle none on edge_num by @wasade in https://github.com/biocore/improved-octo-waddle/pull/45
• well that was incorrect by @wasade in https://github.com/biocore/improved-octo-waddle/pull/46

Full Changelog: https://github.com/biocore/improved-octo-waddle/compare/1.0.2...1.0.3

- Jupyter Notebook
Published by wasade about 4 years ago

https://github.com/biocore/improved-octo-waddle - Minor bug fix

- Jupyter Notebook
Published by wasade about 4 years ago

https://github.com/biocore/improved-octo-waddle - PyPI friendly readme

...1.0.0 was missing the content type

- Jupyter Notebook
Published by wasade about 4 years ago

https://github.com/biocore/improved-octo-waddle - Placement support and more

Note that this project has migrated formally to the biocore organization.

What's Changed

• Update _bp.pyx by @esayyari in https://github.com/biocore/improved-octo-waddle/pull/28
• Expose close by @wasade in https://github.com/biocore/improved-octo-waddle/pull/31
• newick writing support by @wasade in https://github.com/biocore/improved-octo-waddle/pull/32
• Edge numbering by @wasade in https://github.com/biocore/improved-octo-waddle/pull/33
• Placements by @wasade in https://github.com/biocore/improved-octo-waddle/pull/34
• avoid cache invalidation by @wasade in https://github.com/biocore/improved-octo-waddle/pull/38
• Escape on write by @wasade in https://github.com/biocore/improved-octo-waddle/pull/37
• break out r, remove k0 as it was unused by @wasade in https://github.com/biocore/improved-octo-waddle/pull/40
• Cleanup by @wasade in https://github.com/biocore/improved-octo-waddle/pull/39
• Multiplacements by @wasade in https://github.com/biocore/improved-octo-waddle/pull/36
• test automate release by @wasade in https://github.com/biocore/improved-octo-waddle/pull/41

New Contributors

• @esayyari made their first contribution in https://github.com/biocore/improved-octo-waddle/pull/28

Thanks to @antgonza and @kwcantrell for review support.

Full Changelog: https://github.com/biocore/improved-octo-waddle/compare/v0.1.2...1.0.0

- Jupyter Notebook
Published by wasade about 4 years ago

https://github.com/biocore/improved-octo-waddle - Minor bug fix release

Minor release, but fixes a but where quoted structure characters, e.g., "('a,b',c)root;" was getting parsed incorrectly and splitting the 'a,b'.

- Jupyter Notebook
Published by wasade almost 8 years ago

https://github.com/biocore/improved-octo-waddle - Initial release

Initial release of a Balanced Parentheses implementation primarily in Cython. The codebase is not fully optimized, nor is it entirely implemented. However, much of the basic functionality is in place, tested, and reasonably efficient.

- Jupyter Notebook
Published by wasade over 9 years ago