https://github.com/biocore/genome-subsampler
Statistical and empirical subsampling of reference genomes
Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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○DOI references
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○Scientific vocabulary similarity
Low similarity (4.7%) to scientific vocabulary
Repository
Statistical and empirical subsampling of reference genomes
Basic Info
Statistics
- Stars: 3
- Watchers: 10
- Forks: 4
- Open Issues: 10
- Releases: 0
Metadata Files
README.md
Statistical and empirical subsampling of reference genomes
(temporarily named as "genome-subsampler")
The reference genome database is essential for multiple bioinformatic applications, including taxonomic and functional profiling, reference-based assembly and scaffolding, phylogenomic reconstruction and placement, and many more. There is an increasingly significant conflict between the rapid growth of available genome sequences, the frequent limitation of computing power and the demand for efficient and accurate database searching.
This tool attempts to provide a solution by reducing the volume of the reference genome database while retaining as much biodiversity as permitted by a set of statistical and empirical measurements.
This tool is coded in Python 3.x.
Owner
- Name: biocore
- Login: biocore
- Kind: organization
- Location: Cyberspace
- Website: http://biocore.github.io/
- Repositories: 76
- Profile: https://github.com/biocore
Collaboratively developed bioinformatics software.
GitHub Events
Total
Last Year
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Stefan Janssen | s****n@g****m | 16 |
| qiyunzhu | q****u@g****m | 14 |
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 11
- Total pull requests: 10
- Average time to close issues: about 1 month
- Average time to close pull requests: 7 days
- Total issue authors: 2
- Total pull request authors: 4
- Average comments per issue: 0.64
- Average comments per pull request: 3.9
- Merged pull requests: 8
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- qiyunzhu (5)
- sjanssen2 (5)
Pull Request Authors
- sjanssen2 (5)
- qiyunzhu (3)
- anupriyatripathi (1)
- serenejiang (1)